{"openapi":"3.1.0","info":{"title":"OpenAPI definition","version":"v0"},"servers":[{"url":"https://backend-loculus-vision.loculus.org/api-docs/query/not-aligned","description":"Generated server url"}],"security":[{"bearerAuth":[]}],"tags":[{"name":"Query: not-aligned-organism"}],"paths":{"/query/not-aligned-organism/{versionGroup}/sequences":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query unaligned nucleotide sequences","description":"Return unaligned nucleotide sequences for released sequence entries.","operationId":"sequencesGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query unaligned nucleotide sequences","description":"Return unaligned nucleotide sequences for released sequence entries.","operationId":"sequences_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["FASTA","JSON","NDJSON"]},"fastaHeaderTemplate":{"type":"string","description":"Template for FASTA headers, e.g. {accessionVersion}."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"dataFormat":"FASTA","limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query aligned nucleotide sequences","description":"Return aligned nucleotide sequences for released sequence entries.","operationId":"sequencesAlignedGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query aligned nucleotide sequences","description":"Return aligned nucleotide sequences for released sequence entries.","operationId":"sequencesAligned_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["FASTA","JSON","NDJSON"]},"fastaHeaderTemplate":{"type":"string","description":"Template for FASTA headers, e.g. {accessionVersion}."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"dataFormat":"FASTA","limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/{referenceName}":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query aligned nucleotide sequences by reference","description":"Return aligned nucleotide sequences for one reference of released sequence entries.","operationId":"sequencesAlignedForSegmentGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query aligned nucleotide sequences by reference","description":"Return aligned nucleotide sequences for one reference of released sequence entries.","operationId":"sequencesAlignedForSegment_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["FASTA","JSON","NDJSON"]},"fastaHeaderTemplate":{"type":"string","description":"Template for FASTA headers, e.g. {accessionVersion}."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"dataFormat":"FASTA","limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/{referenceName}/mutations":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide mutations by reference","description":"Return nucleotide mutation records for one reference.","operationId":"sequencesAlignedForSegmentMutationsGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide mutations by reference","description":"Return nucleotide mutation records for one reference.","operationId":"sequencesAlignedForSegmentMutations_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]},"minProportion":{"type":"number","description":"Minimum mutation proportion to return."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"minProportion":0.01}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/{referenceName}/aggregatedMutations":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate nucleotide mutations by reference","description":"Return aggregated nucleotide mutations for one reference.","operationId":"sequencesAlignedForSegmentAggregatedMutationsGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate nucleotide mutations by reference","description":"Return aggregated nucleotide mutations for one reference.","operationId":"sequencesAlignedForSegmentAggregatedMutations_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"referenceName","in":"path","description":"Nucleotide reference name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]},"minProportion":{"type":"number","description":"Minimum mutation proportion to return."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"minProportion":0.01}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/mutations":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide mutations","description":"Return nucleotide mutation records for released sequence entries.","operationId":"sequencesAlignedMutationsGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide mutations","description":"Return nucleotide mutation records for released sequence entries.","operationId":"sequencesAlignedMutations_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]},"minProportion":{"type":"number","description":"Minimum mutation proportion to return."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"minProportion":0.01}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/insertions":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide insertions","description":"Return nucleotide insertion records for released sequence entries.","operationId":"sequencesAlignedInsertionsGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query nucleotide insertions","description":"Return nucleotide insertion records for released sequence entries.","operationId":"sequencesAlignedInsertions_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequencesAligned/aggregatedMutations":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate nucleotide mutations","description":"Return aggregated nucleotide mutations for released sequence entries.","operationId":"sequencesAlignedAggregatedMutationsGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate nucleotide mutations","description":"Return aggregated nucleotide mutations for released sequence entries.","operationId":"sequencesAlignedAggregatedMutations_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},{"name":"minProportion","in":"query","description":"Minimum mutation proportion to return.","required":false,"schema":{"type":"number"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]},"minProportion":{"type":"number","description":"Minimum mutation proportion to return."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"minProportion":0.01}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/sequences/{segment}":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query unaligned nucleotide sequences by segment","description":"Return unaligned nucleotide sequences for one segment of released sequence entries.","operationId":"sequencesForSegmentGet_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"segment","in":"path","description":"Sequence segment name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query unaligned nucleotide sequences by segment","description":"Return unaligned nucleotide sequences for one segment of released sequence entries.","operationId":"sequencesForSegment_5","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"segment","in":"path","description":"Sequence segment name for not-aligned-organism.","required":true,"schema":{"type":"string","enum":["main"]}},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["FASTA","JSON","NDJSON"]}},{"name":"fastaHeaderTemplate","in":"query","description":"Template for FASTA headers, e.g. {accessionVersion}.","required":false,"schema":{"type":"string"}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["FASTA","JSON","NDJSON"]},"fastaHeaderTemplate":{"type":"string","description":"Template for FASTA headers, e.g. {accessionVersion}."}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"dataFormat":"FASTA","limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/metadata":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Query metadata","description":"Return metadata rows for released sequence entries.","operationId":"metadataGet_6","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Query metadata","description":"Return metadata rows for released sequence entries.","operationId":"metadata_6","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"fields":["date"],"limit":10}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}},"/query/not-aligned-organism/{versionGroup}/aggregated":{"get":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate metadata","description":"Return aggregated metadata counts for released sequence entries.","operationId":"aggregatedGet_6","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}},"post":{"tags":["Query: not-aligned-organism"],"summary":"Aggregate metadata","description":"Return aggregated metadata counts for released sequence entries.","operationId":"aggregated_6","parameters":[{"name":"versionGroup","in":"path","description":"Use current for latest versions or allVersions for version history.","required":true,"schema":{"type":"string","enum":["current","allVersions"]},"example":"current"},{"name":"x-request-id","in":"header","description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"},{"name":"downloadAsFile","in":"query","description":"Set to true to download the response as a file.","required":false,"schema":{"type":"boolean"}},{"name":"downloadFileBasename","in":"query","description":"Base name for the downloaded file.","required":false,"schema":{"type":"string"}},{"name":"compression","in":"query","description":"Optional response compression. Omit for an uncompressed response.","required":false,"schema":{"type":"string","enum":["gzip","zstd"]}},{"name":"limit","in":"query","description":"Maximum number of rows to return.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"offset","in":"query","description":"Number of rows to skip.","required":false,"schema":{"type":"integer","format":"int32"}},{"name":"orderBy","in":"query","description":"Fields to order by, for example date or date:descending.","required":false,"schema":{"type":"string"}},{"name":"advancedQuery","in":"query","description":"LAPIS advanced query expression.","required":false,"schema":{"type":"string"}},{"name":"nucleotideMutations","in":"query","description":"Nucleotide mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidMutations","in":"query","description":"Amino acid mutation filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"nucleotideInsertions","in":"query","description":"Nucleotide insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"aminoAcidInsertions","in":"query","description":"Amino acid insertion filters.","required":false,"schema":{"type":"array","items":{"type":"string"}}},{"name":"date","in":"query","description":"Filter by date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"date.isNull","in":"query","description":"Filter by nullness of date.","required":false,"schema":{"type":"boolean"}},{"name":"dateFrom","in":"query","description":"Lower bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"dateTo","in":"query","description":"Upper bound filter for date.","required":false,"schema":{"type":"string","description":"Filter by date.","format":"date"}},{"name":"lineage","in":"query","description":"Filter by lineage.","required":false,"schema":{"type":"string","description":"Filter by lineage."}},{"name":"lineage.isNull","in":"query","description":"Filter by nullness of lineage.","required":false,"schema":{"type":"boolean"}},{"name":"lineage.regex","in":"query","description":"Regex filter for lineage.","required":false,"schema":{"type":"string"}},{"name":"region","in":"query","description":"Filter by region.","required":false,"schema":{"type":"string","description":"Filter by region."}},{"name":"region.isNull","in":"query","description":"Filter by nullness of region.","required":false,"schema":{"type":"boolean"}},{"name":"region.regex","in":"query","description":"Regex filter for region.","required":false,"schema":{"type":"string"}},{"name":"country","in":"query","description":"Filter by country.","required":false,"schema":{"type":"string","description":"Filter by country."}},{"name":"country.isNull","in":"query","description":"Filter by nullness of country.","required":false,"schema":{"type":"boolean"}},{"name":"country.regex","in":"query","description":"Regex filter for country.","required":false,"schema":{"type":"string"}},{"name":"division","in":"query","description":"Filter by division.","required":false,"schema":{"type":"string","description":"Filter by division."}},{"name":"division.isNull","in":"query","description":"Filter by nullness of division.","required":false,"schema":{"type":"boolean"}},{"name":"division.regex","in":"query","description":"Regex filter for division.","required":false,"schema":{"type":"string"}},{"name":"host","in":"query","description":"Filter by host.","required":false,"schema":{"type":"string","description":"Filter by host."}},{"name":"host.isNull","in":"query","description":"Filter by nullness of host.","required":false,"schema":{"type":"boolean"}},{"name":"host.regex","in":"query","description":"Regex filter for host.","required":false,"schema":{"type":"string"}},{"name":"versionComment","in":"query","description":"Filter by versionComment.","required":false,"schema":{"type":"string","description":"Filter by versionComment."}},{"name":"versionComment.isNull","in":"query","description":"Filter by nullness of versionComment.","required":false,"schema":{"type":"boolean"}},{"name":"versionComment.regex","in":"query","description":"Regex filter for versionComment.","required":false,"schema":{"type":"string"}},{"name":"fields","in":"query","description":"Metadata fields to return. Repeat the parameter or pass comma-separated values.","required":false,"schema":{"type":"array","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}}},{"name":"dataFormat","in":"query","description":"Response format for this endpoint.","required":false,"schema":{"type":"string","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}}],"requestBody":{"content":{"application/json":{"schema":{"type":"object","properties":{"limit":{"type":"integer","description":"Maximum number of rows to return.","format":"int32"},"offset":{"type":"integer","description":"Number of rows to skip.","format":"int32"},"orderBy":{"type":"array","description":"Metadata fields to order by.","items":{"type":"object","properties":{"field":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]},"type":{"type":"string","enum":["ascending","descending"]}}}},"advancedQuery":{"type":"string","description":"LAPIS advanced query expression."},"nucleotideMutations":{"type":"array","description":"Nucleotide mutation filters.","items":{"type":"string","example":"main:A123T"}},"aminoAcidMutations":{"type":"array","description":"Amino acid mutation filters.","items":{"type":"string","example":"S:123T"}},"nucleotideInsertions":{"type":"array","description":"Nucleotide insertion filters.","items":{"type":"string","example":"ins_123:ATT"}},"aminoAcidInsertions":{"type":"array","description":"Amino acid insertion filters.","items":{"type":"string","example":"ins_ORF1a:123:ATT"}},"downloadAsFile":{"type":"boolean","description":"Set to true to download the response as a file."},"downloadFileBasename":{"type":"string","description":"Base name for the downloaded file."},"compression":{"type":"string","description":"Optional response compression. Omit for an uncompressed response.","enum":["gzip","zstd"]},"date":{"type":"string","description":"Filter by date.","format":"date"},"date.isNull":{"type":"boolean","description":"Filter by nullness of date."},"dateFrom":{"type":"string","description":"Filter by date.","format":"date"},"dateTo":{"type":"string","description":"Filter by date.","format":"date"},"lineage":{"type":"string","description":"Filter by lineage."},"lineage.isNull":{"type":"boolean","description":"Filter by nullness of lineage."},"lineage.regex":{"type":"string","description":"Regex filter for lineage."},"region":{"type":"string","description":"Filter by region."},"region.isNull":{"type":"boolean","description":"Filter by nullness of region."},"region.regex":{"type":"string","description":"Regex filter for region."},"country":{"type":"string","description":"Filter by country."},"country.isNull":{"type":"boolean","description":"Filter by nullness of country."},"country.regex":{"type":"string","description":"Regex filter for country."},"division":{"type":"string","description":"Filter by division."},"division.isNull":{"type":"boolean","description":"Filter by nullness of division."},"division.regex":{"type":"string","description":"Regex filter for division."},"host":{"type":"string","description":"Filter by host."},"host.isNull":{"type":"boolean","description":"Filter by nullness of host."},"host.regex":{"type":"string","description":"Regex filter for host."},"versionComment":{"type":"string","description":"Filter by versionComment."},"versionComment.isNull":{"type":"boolean","description":"Filter by nullness of versionComment."},"versionComment.regex":{"type":"string","description":"Regex filter for versionComment."},"fields":{"type":"array","description":"Metadata fields to return or aggregate.","items":{"type":"string","enum":["date","lineage","region","country","division","host","versionComment"]}},"dataFormat":{"type":"string","description":"Response format for this endpoint.","enum":["JSON","CSV","CSV-WITHOUT-HEADERS","TSV","TSV-ESCAPED"]}},"additionalProperties":true,"description":"LAPIS-compatible query body for Test organism (without alignment).","example":{"fields":["date"]}}}}},"responses":{"422":{"description":"Unprocessable Entity","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"503":{"description":"Service Unavailable","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"500":{"description":"Internal Server Error","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"400":{"description":"Bad Request","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"401":{"description":"Unauthorized","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"409":{"description":"Conflict","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"404":{"description":"Not Found","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"403":{"description":"Forbidden","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/ProblemDetail"}}}},"200":{"description":"OK","headers":{"x-request-id":{"description":"\nA UUID that uniquely identifies the request for tracing purposes.\nIf none is provided in the request, the backend will generate one.\n","required":false,"schema":{"type":"string"},"example":"1747481c-816c-4b60-af20-a61717a35067"}},"content":{"application/json":{"schema":{"$ref":"#/components/schemas/StreamingResponseBody"}}}}}}}},"components":{"schemas":{"Organism":{"type":"object","description":"Key of an organism configured in this Loculus instance. Use GET /api/config/organisms for the live list of valid values."},"ProblemDetail":{"type":"object","properties":{"type":{"type":"string","format":"uri"},"title":{"type":"string"},"status":{"type":"integer","format":"int32"},"detail":{"type":"string"},"instance":{"type":"string","format":"uri"},"properties":{"type":"object","additionalProperties":{"type":"object"}}}},"StreamingResponseBody":{"type":"object"},"SubmittedSeqSetRecord":{"required":["accession","isFocal","type"],"type":"object","properties":{"accession":{"type":"string","description":"The accession of the sequence. Optionally includes a version suffix (e.g., LOC_123456.1).","example":"PP_123456"},"type":{"type":"string","description":"The type of accession (e.g., Loculus, INSDC, RefSeq).","example":"Loculus"},"isFocal":{"type":"string","description":"Whether the record is focal or part of a background set.","example":"true"}}},"SubmittedSeqSetUpdate":{"required":["description","name","records","seqSetId"],"type":"object","properties":{"seqSetId":{"type":"string"},"name":{"type":"string"},"description":{"type":"string"},"records":{"type":"array","items":{"$ref":"#/components/schemas/SubmittedSeqSetRecord"}}}},"ResponseSeqSet":{"required":["seqSetId","seqSetVersion"],"type":"object","properties":{"seqSetId":{"type":"string"},"seqSetVersion":{"type":"integer","format":"int64"}}},"Address":{"required":["city","country","line1","line2","postalCode","state"],"type":"object","properties":{"line1":{"type":"string","description":"The first line of the address.","example":"1234"},"line2":{"type":"string","description":"The second line of the address.","example":"Apt 1"},"city":{"type":"string","description":"The city of the address.","example":"Dortmund"},"state":{"type":"string","description":"The state of the address.","example":"NRW"},"postalCode":{"type":"string","description":"The postal code of the address.","example":"12345"},"country":{"type":"string","description":"The country of the address.","example":"Germany"}}},"NewGroup":{"required":["address","contactEmail","groupName","institution"],"type":"object","properties":{"groupName":{"type":"string","description":"The display name of the group.","example":"Example Group"},"institution":{"type":"string","description":"The name of the institution.","example":"University of Loculus"},"address":{"$ref":"#/components/schemas/Address"},"contactEmail":{"type":"string","description":"The contact email for the group.","example":"something@loculus.org"}},"description":"Information about the newly created group."},"Group":{"required":["address","groupId","groupName","institution"],"type":"object","properties":{"groupId":{"type":"integer","description":"The id of the group.","format":"int32","example":123},"groupName":{"type":"string","description":"The display name of the group.","example":"Example Group"},"institution":{"type":"string","description":"The name of the institution.","example":"University of Loculus"},"address":{"$ref":"#/components/schemas/Address"},"contactEmail":{"type":"string","description":"The contact email for the group. Will be `null` if not authenticated.","example":"something@loculus.org"}}},"DataUseTerms":{"required":["type"],"type":"object","properties":{"type":{"type":"string"}},"discriminator":{"propertyName":"type"}},"DataUseTermsChangeRequest":{"required":["accessions","newDataUseTerms"],"type":"object","properties":{"accessions":{"type":"array","description":"A list of accessions of the dataset to set the data use terms for","items":{"type":"string"}},"newDataUseTerms":{"oneOf":[{"$ref":"#/components/schemas/Open"},{"$ref":"#/components/schemas/Restricted"}]}}},"Open":{"description":"The sequence entry is open access. No restrictions apply.","allOf":[{"$ref":"#/components/schemas/DataUseTerms"}]},"Restricted":{"required":["restrictedUntil"],"description":"The sequence entry is restricted access.","allOf":[{"$ref":"#/components/schemas/DataUseTerms"},{"type":"object","properties":{"restrictedUntil":{"type":"string","description":"The date (YYYY-MM-DD) until which the sequence entry is restricted.","format":"date","example":"2021-01-01"}}}]},"AuthenticatedUser":{"required":["isPreprocessingPipeline","isSuperUser","username"],"type":"object","properties":{"username":{"type":"string"},"isPreprocessingPipeline":{"type":"boolean"},"isSuperUser":{"type":"boolean"}}},"EarliestReleaseDate":{"required":["enabled","externalFields"],"type":"object","properties":{"enabled":{"type":"boolean"},"externalFields":{"type":"array","items":{"type":"string"}}}},"ExternalMetadata":{"required":["externalMetadataUpdater","name","required","type"],"type":"object","properties":{"externalMetadataUpdater":{"type":"string"},"name":{"type":"string"},"type":{"type":"string","enum":["string","int","float","number","date","timestamp","boolean","authors"]},"required":{"type":"boolean"}}},"FileCategory":{"required":["name"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"}}},"FilesSubmissionDataType":{"required":["categories","enabled"],"type":"object","properties":{"enabled":{"type":"boolean"},"categories":{"type":"array","items":{"$ref":"#/components/schemas/FileCategory"}}}},"InputField":{"required":["name"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"},"noEdit":{"type":"boolean"},"required":{"type":"boolean"},"definition":{"type":"string"},"example":{"type":"object"},"guidance":{"type":"string"},"desired":{"type":"boolean"},"options":{"type":"array","items":{"$ref":"#/components/schemas/InputFieldOption"}}}},"InputFieldOption":{"required":["name"],"type":"object","properties":{"name":{"type":"string"}}},"LinkOut":{"required":["name","url"],"type":"object","properties":{"name":{"type":"string"},"url":{"type":"string"},"maxNumberOfRecommendedEntries":{"type":"integer","format":"int32"},"onlyForReferences":{"type":"object","additionalProperties":{"type":"string"}},"category":{"type":"string"}}},"Metadata":{"required":["name","required","type"],"type":"object","properties":{"name":{"type":"string"},"type":{"type":"string","enum":["string","int","float","number","date","timestamp","boolean","authors"]},"required":{"type":"boolean"},"displayName":{"type":"string"},"description":{"type":"string"},"definition":{"type":"string"},"header":{"type":"string"},"hidden":{"type":"boolean"},"customDisplay":{"type":"object","additionalProperties":{"type":"object"}},"autocomplete":{"type":"boolean"},"notSearchable":{"type":"boolean"},"noInput":{"type":"boolean"},"hideInSearchResultsTable":{"type":"boolean"},"initiallyVisible":{"type":"boolean"},"hideOnSequenceDetailsPage":{"type":"boolean"},"rangeSearch":{"type":"boolean"},"rangeOverlapSearch":{"$ref":"#/components/schemas/RangeOverlapSearch"},"substringSearch":{"type":"boolean"},"lineageSearch":{"type":"boolean"},"columnWidth":{"type":"integer","format":"int32"},"order":{"type":"integer","format":"int32"},"orderOnDetailsPage":{"type":"integer","format":"int32"},"orderInSearchDisplay":{"type":"integer","format":"int32"},"includeInDownloadsByDefault":{"type":"boolean"},"onlyForReference":{"type":"string"},"isSequenceFilter":{"type":"boolean"},"relatesToSegment":{"type":"string"},"percentage":{"type":"boolean"},"perSegment":{"type":"boolean"},"lineageSystem":{"type":"string"},"generateIndex":{"type":"boolean"},"oneHeader":{"type":"boolean"},"options":{"type":"array","items":{"$ref":"#/components/schemas/MetadataOption"}},"ingest":{"type":"string"},"ontology_id":{"type":"string"}}},"MetadataOption":{"required":["name"],"type":"object","properties":{"name":{"type":"string"}}},"MultiFieldSearch":{"required":["displayName","fields","name"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"},"fields":{"type":"array","items":{"type":"string"}},"orderInSearchDisplay":{"type":"integer","format":"int32"}}},"OrganismConfig":{"required":["referenceGenome","schema"],"type":"object","properties":{"schema":{"$ref":"#/components/schemas/Schema"},"referenceGenome":{"$ref":"#/components/schemas/ReferenceGenome"},"displayName":{"type":"string"},"description":{"type":"string"},"image":{"$ref":"#/components/schemas/OrganismImage"},"referenceGenomes":{"type":"array","items":{"$ref":"#/components/schemas/ReferenceGenomeSegment"}},"lapisUrl":{"type":"string"}}},"OrganismImage":{"required":["url"],"type":"object","properties":{"url":{"type":"string"}}},"PutDraftRequestOrganismConfig":{"required":["config"],"type":"object","properties":{"config":{"$ref":"#/components/schemas/OrganismConfig"}}},"RangeOverlapSearch":{"required":["bound","rangeDisplayName","rangeName"],"type":"object","properties":{"rangeName":{"type":"string"},"rangeDisplayName":{"type":"string"},"bound":{"type":"string","enum":["lower","upper"]}}},"Reference":{"required":["name","sequence"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"},"sequence":{"type":"string"},"insdcAccessionFull":{"type":"string"},"genes":{"type":"array","items":{"$ref":"#/components/schemas/ReferenceGene"}}}},"ReferenceGene":{"required":["name","sequence"],"type":"object","properties":{"name":{"type":"string"},"sequence":{"type":"string"}}},"ReferenceGenome":{"required":["genes","nucleotideSequences"],"type":"object","properties":{"nucleotideSequences":{"type":"array","items":{"$ref":"#/components/schemas/ReferenceSequence"}},"genes":{"type":"array","items":{"$ref":"#/components/schemas/ReferenceSequence"}}}},"ReferenceGenomeSegment":{"required":["name","references"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"},"references":{"type":"array","items":{"$ref":"#/components/schemas/Reference"}}}},"ReferenceSequence":{"required":["name","sequence"],"type":"object","properties":{"name":{"type":"string"},"sequence":{"type":"string"}}},"Schema":{"required":["earliestReleaseDate","externalMetadata","files","inputFields","linkOuts","metadata","organismName","submissionDataTypes","tableColumns"],"type":"object","properties":{"organismName":{"type":"string"},"image":{"type":"string"},"metadata":{"type":"array","items":{"$ref":"#/components/schemas/Metadata"}},"externalMetadata":{"type":"array","items":{"$ref":"#/components/schemas/ExternalMetadata"}},"metadataTemplate":{"type":"array","items":{"type":"string"}},"inputFields":{"type":"array","items":{"$ref":"#/components/schemas/InputField"}},"tableColumns":{"type":"array","items":{"type":"string"}},"primaryKey":{"type":"string"},"defaultOrderBy":{"type":"string"},"defaultOrder":{"type":"string","enum":["ascending","descending"]},"earliestReleaseDate":{"$ref":"#/components/schemas/EarliestReleaseDate"},"submissionDataTypes":{"$ref":"#/components/schemas/SubmissionDataTypes"},"files":{"type":"array","items":{"$ref":"#/components/schemas/FileCategory"}},"loadSequencesAutomatically":{"type":"boolean"},"richFastaHeaderFields":{"type":"array","items":{"type":"string"}},"linkOuts":{"type":"array","items":{"$ref":"#/components/schemas/LinkOut"}},"referenceIdentifierField":{"type":"string"},"multiFieldSearches":{"type":"array","items":{"$ref":"#/components/schemas/MultiFieldSearch"}}}},"SubmissionDataTypes":{"required":["alignedNucleotideSequences","consensusSequences","files"],"type":"object","properties":{"consensusSequences":{"type":"boolean"},"alignedNucleotideSequences":{"type":"boolean"},"maxSequencesPerEntry":{"type":"integer","format":"int32"},"files":{"$ref":"#/components/schemas/FilesSubmissionDataType"}}},"DraftMutationResponse":{"required":["revision"],"type":"object","properties":{"revision":{"type":"integer","format":"int64"}}},"FieldToDisplay":{"required":["displayName","field"],"type":"object","properties":{"field":{"type":"string"},"displayName":{"type":"string"}}},"FileSharing":{"required":["outputFileUrlType"],"type":"object","properties":{"outputFileUrlType":{"type":"string","enum":["website","backend","s3"]}}},"GithubSequenceFlagging":{"required":["organization","repository"],"type":"object","properties":{"organization":{"type":"string"},"repository":{"type":"string"},"issueTemplate":{"type":"string"}}},"InstanceConfig":{"required":["accessionPrefix","dataUseTerms","enableLoginNavigationItem","enableSeqSets","enableSubmissionNavigationItem","enableSubmissionPages","fileSharing","name","views"],"type":"object","properties":{"name":{"type":"string"},"accessionPrefix":{"type":"string"},"dataUseTerms":{"oneOf":[{"$ref":"#/components/schemas/DataUseTerms"},{"$ref":"#/components/schemas/Open"},{"$ref":"#/components/schemas/Restricted"}]},"fileSharing":{"$ref":"#/components/schemas/FileSharing"},"description":{"type":"string"},"logo":{"$ref":"#/components/schemas/Logo"},"supportContact":{"$ref":"#/components/schemas/SupportContact"},"bannerMessage":{"type":"string"},"bannerMessageURL":{"type":"string"},"submissionBannerMessage":{"type":"string"},"submissionBannerMessageURL":{"type":"string"},"welcomeMessageHTML":{"type":"string"},"additionalHeadHTML":{"type":"string"},"gitHubEditLink":{"type":"string"},"gitHubMainUrl":{"type":"string"},"gitHubIssuesUrl":{"type":"string"},"issuesEmail":{"type":"string"},"enableSeqSets":{"type":"boolean"},"seqSetsFieldsToDisplay":{"type":"array","items":{"$ref":"#/components/schemas/FieldToDisplay"}},"seqSetsGraphs":{"type":"array","items":{"$ref":"#/components/schemas/SeqSetGraph"}},"enableLoginNavigationItem":{"type":"boolean"},"enableSubmissionNavigationItem":{"type":"boolean"},"enableSubmissionPages":{"type":"boolean"},"dataUseTermsAgreementHTML":{"type":"string"},"sequenceFlagging":{"$ref":"#/components/schemas/SequenceFlaggingConfig"},"dateFieldForGroupGraph":{"type":"string"},"lineageSystemDefinitions":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"string"}}},"views":{"type":"object","additionalProperties":{"$ref":"#/components/schemas/ViewConfig"}},"overview":{"$ref":"#/components/schemas/ViewConfig"}}},"Logo":{"required":["url"],"type":"object","properties":{"url":{"type":"string"},"alt":{"type":"string"},"height":{"type":"integer","format":"int32"},"width":{"type":"integer","format":"int32"}}},"PutDraftRequestInstanceConfig":{"required":["config"],"type":"object","properties":{"config":{"$ref":"#/components/schemas/InstanceConfig"}}},"SeqSetGraph":{"required":["displayName","fields","name","type"],"type":"object","properties":{"name":{"type":"string"},"displayName":{"type":"string"},"type":{"type":"string","enum":["date","category"]},"fields":{"type":"array","items":{"type":"string"}}}},"SequenceFlaggingConfig":{"required":["github"],"type":"object","properties":{"github":{"$ref":"#/components/schemas/GithubSequenceFlagging"}}},"SupportContact":{"type":"object","properties":{"email":{"type":"string"},"url":{"type":"string"}}},"ViewConfig":{"required":["displayName","query","schema","tableColumns"],"type":"object","properties":{"displayName":{"type":"string"},"query":{"type":"string"},"schema":{"type":"string"},"tableColumns":{"type":"array","items":{"type":"string"}},"sequenceData":{"$ref":"#/components/schemas/ViewSequenceData"},"lapisUrl":{"type":"string"}}},"ViewSequenceData":{"type":"object","properties":{"unalignedNucleotideSequences":{"$ref":"#/components/schemas/ViewUnalignedNucleotideSequences"}}},"ViewUnalignedNucleotideSequences":{"required":["enabled","segments","sourceSegments"],"type":"object","properties":{"enabled":{"type":"boolean"},"segments":{"type":"array","items":{"type":"string"}},"sourceSegments":{"type":"object","additionalProperties":{"type":"object","additionalProperties":{"type":"string"}}}}},"SubmissionIdMapping":{"required":["accession","submissionId","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"},"submissionId":{"type":"string"}}},"FileIdAndName":{"required":["fileId","name"],"type":"object","properties":{"fileId":{"type":"string","format":"uuid"},"name":{"type":"string"}}},"JsonNode":{"type":"object"},"PreprocessingAnnotation":{"required":["message","processedFields","unprocessedFields"],"type":"object","properties":{"unprocessedFields":{"type":"array","items":{"$ref":"#/components/schemas/PreprocessingAnnotationSource"}},"processedFields":{"type":"array","items":{"$ref":"#/components/schemas/PreprocessingAnnotationSource"}},"message":{"type":"string","description":"A descriptive message that helps the submitter to fix the issue"}}},"PreprocessingAnnotationSource":{"required":["name","type"],"type":"object","properties":{"type":{"type":"string","enum":["Metadata","NucleotideSequence"]},"name":{"type":"string","description":"Field or sequence segment name"}}},"ProcessedDataString":{"required":["alignedAminoAcidSequences","alignedNucleotideSequences","aminoAcidInsertions","metadata","nucleotideInsertions","sequenceNameToFastaId","unalignedNucleotideSequences"],"type":"object","properties":{"metadata":{"type":"object","additionalProperties":{"$ref":"#/components/schemas/JsonNode"},"description":"Key value pairs of metadata, correctly typed","example":{"date":"2020-01-01","country":"Germany","age":42,"qc":0.95}},"unalignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the segment name, the value is the nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"alignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the segment name, the value is the aligned nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"nucleotideInsertions":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string"}},"description":"The key is the segment name, the value is a list of nucleotide insertions","example":{"segment1":["123:GTCA","345:AAAA"],"segment2":["123:GTCA","345:AAAA"]}},"alignedAminoAcidSequences":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the gene name, the value is the amino acid sequence","example":{"gene1":"NRNR","gene2":"NRNR"}},"aminoAcidInsertions":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string"}},"description":"The key is the gene name, the value is a list of amino acid insertions","example":{"gene1":["123:RRN","345:NNN"],"gene2":["123:NNR","345:RN"]}},"sequenceNameToFastaId":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the segment name, the value is the fastaHeader of the originally submitted data","example":{"segment1":"fastaHeader1","segment2":"fastaHeader2"}},"files":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/components/schemas/FileIdAndName"}},"description":"The key is the file category name, the value is a list of files, with ID and name.","example":{"raw_reads":[{"fileId":"s0m3-uUiDd","name":"data.fastaq"}],"sequencing_logs":[]}}}},"SubmittedProcessedData":{"required":["accession","data","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"},"data":{"$ref":"#/components/schemas/ProcessedDataString"},"errors":{"type":"array","description":"The processing failed due to these errors.","items":{"$ref":"#/components/schemas/PreprocessingAnnotation"}},"warnings":{"type":"array","description":"Issues where data is not necessarily wrong, but the submitter might want to look into those warnings.","items":{"$ref":"#/components/schemas/PreprocessingAnnotation"}}}},"ExternalSubmittedData":{"required":["accession","externalMetadata","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"},"externalMetadata":{"type":"object","additionalProperties":{"$ref":"#/components/schemas/JsonNode"}}}},"EditedSequenceEntryData":{"required":["accession","data","version"],"type":"object","properties":{"accession":{"type":"string","example":"LOC_000S01D"},"version":{"type":"integer","format":"int64","example":1},"data":{"$ref":"#/components/schemas/SubmittedContentInternalStringFileIdAndName"}}},"SubmittedContentInternalStringFileIdAndName":{"required":["metadata","unalignedNucleotideSequences"],"type":"object","properties":{"metadata":{"type":"object","additionalProperties":{"type":"string"},"description":"Key value pairs of metadata, as submitted in the metadata file","example":{"date":"2020-01-01","country":"Germany"}},"unalignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the fastaID, the value is the nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"files":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/components/schemas/FileIdAndName"}},"description":"A map from file categories, to lists of files. The files can also have URLs.","example":"{\"raw_reads\": [{\"fileId\": \"f1le-uuId-asdf\", \"name\": \"myfile.fastaq\"]}"}}},"AccessionsToRevokeWithComment":{"required":["accessions"],"type":"object","properties":{"accessions":{"type":"array","description":"List of accessions to revoke.","items":{"type":"string"}},"versionComment":{"type":"string","description":"Reason for revocation or other details"}}},"GetSubmittedDataRequest":{"required":["groupId"],"type":"object","properties":{"groupId":{"type":"integer","description":"The group ID to download data for.","format":"int32"},"accessionsFilter":{"type":"array","description":"Filter by specific accessions. If not provided, all accessions for the group are returned.","items":{"type":"string"}}}},"FileIdAndNameAndReadUrl":{"required":["fileId","name","url"],"type":"object","properties":{"fileId":{"type":"string","format":"uuid"},"name":{"type":"string"},"url":{"type":"string"}}},"SubmittedContentInternalStringFileIdAndNameAndReadUrl":{"required":["metadata","unalignedNucleotideSequences"],"type":"object","properties":{"metadata":{"type":"object","additionalProperties":{"type":"string"},"description":"Key value pairs of metadata, as submitted in the metadata file","example":{"date":"2020-01-01","country":"Germany"}},"unalignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the fastaID, the value is the nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"files":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/components/schemas/FileIdAndNameAndReadUrl"}},"description":"A map from file categories, to lists of files. The files can also have URLs.","example":"{\"raw_reads\": [{\"fileId\": \"f1le-uuId-asdf\", \"name\": \"myfile.fastaq\"]}"}}},"UnprocessedData":{"required":["accession","data","groupId","submissionId","submittedAt","submitter","version"],"type":"object","properties":{"accession":{"type":"string","example":"LOC_000S01D"},"version":{"type":"integer","format":"int64","example":1},"data":{"$ref":"#/components/schemas/SubmittedContentInternalStringFileIdAndNameAndReadUrl"},"submissionId":{"type":"string","description":"The submission id that was used in the upload to link metadata and sequences"},"submitter":{"type":"string","description":"The username of the submitter"},"groupId":{"type":"integer","description":"The id of the group that this sequence entry was submitted by","format":"int32","example":42},"submittedAt":{"type":"integer","description":"Unix timestamp in seconds","format":"int64","example":1720304713}}},"AccessionVersion":{"required":["accession","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"}}},"AccessionVersionsFilterWithApprovalScope":{"required":["scope"],"type":"object","properties":{"accessionVersionsFilter":{"type":"array","description":"A List of accession versions that the operation will be restricted to. Omit or set to null to consider all sequences.","items":{"$ref":"#/components/schemas/AccessionVersion"}},"groupIdsFilter":{"type":"array","items":{"type":"integer","format":"int32"}},"submitterNamesFilter":{"type":"array","items":{"type":"string"}},"scope":{"type":"string","description":"Scope for approval. If scope is set to 'ALL', all sequences are approved. If scope is set to 'WITHOUT_WARNINGS', only sequences without warnings are approved.","enum":["ALL","WITHOUT_WARNINGS"]}}},"FileIdAndWriteUrl":{"required":["fileId","url"],"type":"object","properties":{"fileId":{"type":"string","description":"The id of the file.","format":"uuid","example":"8d8ac610-566d-4ef0-9c22-186b2a5ed793"},"url":{"type":"string","description":"A presigned URL, allowing users to PUT an object.","example":"https://dummyendpoint.com/dummybucket/files/2ea137d0-8773-4e0a-a9aa-5591de12ff23?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=dummyaccesskey%2F20250330%2Fdummyregion%2Fs3%2Faws4_request&X-Amz-Date=20250330T184050Z&X-Amz-Expires=1800&X-Amz-SignedHeaders=host&X-Amz-Signature=9717e8d8c8242d0d266f816c665d78b1d842de5286fb59e37329f090e9bb0b9e"}}},"FileIdAndMultipartWriteUrl":{"required":["fileId","urls"],"type":"object","properties":{"fileId":{"type":"string","description":"The id of the file.","format":"uuid","example":"8d8ac610-566d-4ef0-9c22-186b2a5ed793"},"urls":{"type":"array","description":"A list of presigned URL, allowing users to PUT parts of an object.","items":{"type":"string"}}}},"FileIdAndEtags":{"required":["etags","fileId"],"type":"object","properties":{"fileId":{"type":"string","format":"uuid"},"etags":{"type":"array","items":{"type":"string"}}}},"SubmittedSeqSet":{"required":["name","records"],"type":"object","properties":{"name":{"type":"string"},"description":{"type":"string"},"records":{"type":"array","items":{"$ref":"#/components/schemas/SubmittedSeqSetRecord"}}}},"CreateOrganismRequest":{"required":["key"],"type":"object","properties":{"key":{"type":"string"}}},"OrganismListing":{"required":["deployed","key","status"],"type":"object","properties":{"key":{"type":"string"},"status":{"type":"string"},"currentVersion":{"type":"integer","format":"int64"},"deployed":{"type":"boolean"}}},"PublishResponse":{"required":["publishedAt","publishedBy","version"],"type":"object","properties":{"version":{"type":"integer","format":"int64"},"previousVersion":{"type":"integer","format":"int64"},"publishedAt":{"type":"string","format":"date-time"},"publishedBy":{"type":"string"}}},"AppendOperationsRequest":{"required":["operations"],"type":"object","properties":{"operations":{"type":"array","items":{"$ref":"#/components/schemas/OperationRequest"}}}},"OperationRequest":{"required":["payload","type"],"type":"object","properties":{"type":{"type":"string"},"payload":{"$ref":"#/components/schemas/JsonNode"}}},"GetSequenceResponse":{"required":["processingResultCounts","sequenceEntries","statusCounts"],"type":"object","properties":{"sequenceEntries":{"type":"array","items":{"$ref":"#/components/schemas/SequenceEntryStatus"}},"statusCounts":{"type":"object","additionalProperties":{"type":"integer","format":"int32"}},"processingResultCounts":{"type":"object","additionalProperties":{"type":"integer","format":"int32"}}}},"SequenceEntryStatus":{"required":["accession","dataUseTerms","groupId","isRevocation","status","submissionId","submitter","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"},"status":{"type":"string","enum":["RECEIVED","IN_PROCESSING","PROCESSED","APPROVED_FOR_RELEASE"]},"processingResult":{"type":"string","enum":["NO_ISSUES","HAS_WARNINGS","HAS_ERRORS"]},"groupId":{"type":"integer","format":"int32"},"submitter":{"type":"string"},"isRevocation":{"type":"boolean"},"submissionId":{"type":"string"},"dataUseTerms":{"oneOf":[{"$ref":"#/components/schemas/Open"},{"$ref":"#/components/schemas/Restricted"}]}}},"ProcessedData":{"required":["alignedAminoAcidSequences","alignedNucleotideSequences","aminoAcidInsertions","metadata","nucleotideInsertions","sequenceNameToFastaId","unalignedNucleotideSequences"],"type":"object","properties":{"metadata":{"type":"object","additionalProperties":{"$ref":"#/components/schemas/JsonNode"},"description":"Key value pairs of metadata, correctly typed","example":{"date":"2020-01-01","country":"Germany","age":42,"qc":0.95}},"unalignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"object"},"description":"The key is the segment name, the value is the nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"alignedNucleotideSequences":{"type":"object","additionalProperties":{"type":"object"},"description":"The key is the segment name, the value is the aligned nucleotide sequence","example":{"segment1":"ACTG","segment2":"GTCA"}},"nucleotideInsertions":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string"}},"description":"The key is the segment name, the value is a list of nucleotide insertions","example":{"segment1":["123:GTCA","345:AAAA"],"segment2":["123:GTCA","345:AAAA"]}},"alignedAminoAcidSequences":{"type":"object","additionalProperties":{"type":"object"},"description":"The key is the gene name, the value is the amino acid sequence","example":{"gene1":"NRNR","gene2":"NRNR"}},"aminoAcidInsertions":{"type":"object","additionalProperties":{"type":"array","items":{"type":"string"}},"description":"The key is the gene name, the value is a list of amino acid insertions","example":{"gene1":["123:RRN","345:NNN"],"gene2":["123:NNR","345:RN"]}},"sequenceNameToFastaId":{"type":"object","additionalProperties":{"type":"string"},"description":"The key is the segment name, the value is the fastaHeader of the originally submitted data","example":{"segment1":"fastaHeader1","segment2":"fastaHeader2"}},"files":{"type":"object","additionalProperties":{"type":"array","items":{"$ref":"#/components/schemas/FileIdAndName"}},"description":"The key is the file category name, the value is a list of files, with ID and name.","example":{"raw_reads":[{"fileId":"s0m3-uUiDd","name":"data.fastaq"}],"sequencing_logs":[]}}}},"SequenceEntryVersionToEdit":{"required":["accession","groupId","processedData","status","submissionId","submittedData","version"],"type":"object","properties":{"accession":{"type":"string"},"version":{"type":"integer","format":"int64"},"status":{"type":"string","enum":["RECEIVED","IN_PROCESSING","PROCESSED","APPROVED_FOR_RELEASE"]},"groupId":{"type":"integer","format":"int32"},"processedData":{"$ref":"#/components/schemas/ProcessedDataString"},"submittedData":{"$ref":"#/components/schemas/SubmittedContentInternalStringFileIdAndName"},"errors":{"type":"array","description":"The preprocessing will be considered failed if this is not empty","items":{"$ref":"#/components/schemas/PreprocessingAnnotation"}},"warnings":{"type":"array","description":"Issues where data is not necessarily wrong, but the user might want to look into those warnings.","items":{"$ref":"#/components/schemas/PreprocessingAnnotation"}},"submissionId":{"type":"string"}}},"GroupDetails":{"required":["group"],"type":"object","properties":{"group":{"$ref":"#/components/schemas/Group"},"users":{"type":"array","items":{"$ref":"#/components/schemas/User"}}}},"User":{"required":["name"],"type":"object","properties":{"name":{"type":"string"}}},"CitedBy":{"required":["citations","years"],"type":"object","properties":{"years":{"type":"string","description":"The years in which the SeqSet or sequence was cited.","example":"[2000, 2001, 2002]"},"citations":{"type":"string","description":"The number of citations per year.","example":"[1, 2, 3]"}}},"SeqSet":{"required":["createdAt","createdBy","name","seqSetId","seqSetVersion"],"type":"object","properties":{"seqSetId":{"type":"string"},"seqSetVersion":{"type":"integer","format":"int64"},"name":{"type":"string"},"createdAt":{"type":"string","format":"date-time"},"createdBy":{"type":"string"},"description":{"type":"string"},"seqSetDOI":{"type":"string","description":"The DOI of the SeqSet.","example":"10.1234/5678"}}},"SeqSetRecord":{"required":["accession","isFocal","seqSetRecordId","type"],"type":"object","properties":{"seqSetRecordId":{"type":"integer","format":"int64"},"accession":{"type":"string"},"type":{"type":"string"},"isFocal":{"type":"boolean"}}},"CitationContributor":{"required":["givenName","surname"],"type":"object","properties":{"givenName":{"type":"string","example":"Jane"},"surname":{"type":"string","example":"Doe"}},"description":"Contributor to a citation source."},"CitationSource":{"required":["contributors","sourceDOI","title","year"],"type":"object","properties":{"sourceDOI":{"type":"string","description":"The DOI of the citation source.","example":"10.1234/5678"},"title":{"type":"string","description":"The title of the citation source.","example":"Publication that references a SeqSet"},"year":{"type":"integer","description":"The year the citation source was released.","format":"int32","example":2026},"contributors":{"type":"array","description":"List of contributors to the citation source.","items":{"$ref":"#/components/schemas/CitationContributor"}}},"description":"A publication or other content which cites one or more SeqSets."},"SeqSetCitation":{"required":["source"],"type":"object","properties":{"source":{"$ref":"#/components/schemas/CitationSource"}},"description":"A citation of a SeqSet."},"AuthorProfile":{"required":["emailDomain","firstName","lastName","username"],"type":"object","properties":{"username":{"type":"string"},"firstName":{"type":"string"},"lastName":{"type":"string"},"emailDomain":{"type":"string"},"university":{"type":"string","description":"The university the author is affiliated with.","example":"University of Example"}}},"DataUseTermsHistoryEntry":{"required":["accession","changeDate","dataUseTerms","userName"],"type":"object","properties":{"accession":{"type":"string"},"changeDate":{"type":"string","description":"The date time string (ISO-8601) until which the sequence entry is restricted.","format":"date"},"dataUseTerms":{"oneOf":[{"$ref":"#/components/schemas/Open"},{"$ref":"#/components/schemas/Restricted"}]},"userName":{"type":"string","description":"The user who changed the data use terms of the sequence entry."}}},"OrganismSummary":{"required":["currentVersion","displayName","key"],"type":"object","properties":{"key":{"type":"string"},"displayName":{"type":"string"},"currentVersion":{"type":"integer","format":"int64"}}},"OrganismsListResponse":{"required":["organisms"],"type":"object","properties":{"organisms":{"type":"array","items":{"$ref":"#/components/schemas/OrganismSummary"}}}},"OrganismResponse":{"required":["config","key","publishedAt","version"],"type":"object","properties":{"key":{"type":"string"},"version":{"type":"integer","format":"int64"},"publishedAt":{"type":"string","format":"date-time"},"config":{"$ref":"#/components/schemas/OrganismConfig"}}},"PreprocessingConfigListResponse":{"required":["versions"],"type":"object","properties":{"versions":{"type":"array","items":{"$ref":"#/components/schemas/PreprocessingConfigVersion"}}}},"PreprocessingConfigVersion":{"required":["pipelineVersion","updatedAt","updatedBy"],"type":"object","properties":{"pipelineVersion":{"type":"integer","format":"int64"},"updatedAt":{"type":"string","format":"date-time"},"updatedBy":{"type":"string"}}},"InstanceResponse":{"required":["config","publishedAt","readOnlyMode","version"],"type":"object","properties":{"version":{"type":"integer","format":"int64"},"publishedAt":{"type":"string","format":"date-time"},"config":{"$ref":"#/components/schemas/InstanceConfig"},"readOnlyMode":{"type":"boolean"}}},"AdminOrganismsListResponse":{"required":["organisms"],"type":"object","properties":{"organisms":{"type":"array","items":{"$ref":"#/components/schemas/OrganismListing"}}}},"VersionListing":{"required":["publishedAt","publishedBy","version"],"type":"object","properties":{"version":{"type":"integer","format":"int64"},"publishedAt":{"type":"string","format":"date-time"},"publishedBy":{"type":"string"}}},"VersionsResponse":{"required":["versions"],"type":"object","properties":{"versions":{"type":"array","items":{"$ref":"#/components/schemas/VersionListing"}}}},"OrganismDraftResponse":{"required":["config","operations","revision"],"type":"object","properties":{"config":{"$ref":"#/components/schemas/OrganismConfig"},"baseVersion":{"type":"integer","format":"int64"},"revision":{"type":"integer","format":"int64"},"operations":{"type":"array","items":{"$ref":"#/components/schemas/PendingOp"}}}},"PendingOp":{"required":["appliedAt","appliedBy","opType","summary"],"type":"object","properties":{"opType":{"type":"string"},"summary":{"type":"string"},"appliedAt":{"type":"string","format":"date-time"},"appliedBy":{"type":"string"}}},"InstanceDraftResponse":{"required":["config","revision"],"type":"object","properties":{"config":{"$ref":"#/components/schemas/InstanceConfig"},"baseVersion":{"type":"integer","format":"int64"},"revision":{"type":"integer","format":"int64"}}},"AuditEntry":{"required":["action","actor","id","occurredAt","scope"],"type":"object","properties":{"id":{"type":"integer","format":"int64"},"occurredAt":{"type":"string","format":"date-time"},"actor":{"type":"string"},"scope":{"type":"string"},"organismKey":{"type":"string"},"action":{"type":"string"},"details":{"type":"object","additionalProperties":{"type":"object"}},"resultVersion":{"type":"integer","format":"int64"}}},"AuditResponse":{"required":["entries"],"type":"object","properties":{"entries":{"type":"array","items":{"$ref":"#/components/schemas/AuditEntry"}}}},"Link":{"type":"object","properties":{"href":{"type":"string"},"templated":{"type":"boolean"}}},"AccessionVersionsFilterWithDeletionScope":{"required":["scope"],"type":"object","properties":{"accessionVersionsFilter":{"type":"array","description":"A List of accession versions that the operation will be restricted to. Omit or set to null to consider all sequences.","items":{"$ref":"#/components/schemas/AccessionVersion"}},"groupIdsFilter":{"type":"array","items":{"type":"integer","format":"int32"}},"scope":{"type":"string","description":"Scope for deletion. If scope is set to 'ALL', all sequences are deleted. If scope is set to 'PROCESSED_WITH_ERRORS', only processed sequences with errors are deleted. If scope is set to 'PROCESSED_WITH_WARNINGS', only processed sequences in `AWAITING_APPROVAL` with warnings are deleted.","enum":["ALL","PROCESSED_WITH_ERRORS","PROCESSED_WITH_WARNINGS"]}}}},"securitySchemes":{"bearerAuth":{"type":"http","scheme":"bearer","bearerFormat":"JWT"}}}}